Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2913332..2913603 | Replicon | chromosome |
| Accession | NZ_CP027342 | ||
| Organism | Escherichia coli strain 2014C-4587 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2913462..2913565 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2913332..2913603 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N23_RS14955 | 2909887..2910549 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6N23_RS14960 | 2910573..2911229 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6N23_RS14965 | 2911331..2911561 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6N23_RS14970 | 2911700..2912074 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6N23_RS14975 | 2912078..2912950 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| C6N23_RS14980 | 2912963..2913304 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2913332..2913603 | - | 272 | - | - | Antitoxin |
| - | 2913462..2913565 | + | 104 | - | - | Toxin |
| C6N23_RS14985 | 2913700..2914356 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| C6N23_RS14990 | 2914357..2914548 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6N23_RS14995 | 2914653..2914889 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6N23_RS15000 | 2915007..2916446 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98133 NZ_CP027342:2913462-2913565 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98133 NZ_CP027342:c2913603-2913332 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
