Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4309377..4309648 Replicon chromosome
Accession NZ_CP027340
Organism Escherichia coli strain 2015C-3121

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4309415..4309518 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4309377..4309648 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C6N25_RS23370 4306535..4307973 + 1439 Protein_4210 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
C6N25_RS23375 4308091..4308327 + 237 WP_001295499.1 DUF1480 family protein -
C6N25_RS23380 4308432..4308623 + 192 WP_001296140.1 YebW family protein -
C6N25_RS23385 4308624..4309280 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 4309377..4309648 + 272 - - Antitoxin
- 4309415..4309518 - 104 - - Toxin
C6N25_RS23390 4309676..4310017 - 342 WP_000976492.1 YebY family protein -
C6N25_RS23395 4310030..4310902 - 873 WP_000879285.1 copper homeostasis membrane protein CopD -
C6N25_RS23400 4310906..4311280 - 375 WP_000204699.1 CopC domain-containing protein YobA -
C6N25_RS23405 4311419..4311649 + 231 WP_000916763.1 DNA polymerase III subunit theta -
C6N25_RS23410 4311751..4312407 + 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
C6N25_RS23415 4312431..4313093 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T98111 NZ_CP027340:c4309518-4309415 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT98111 NZ_CP027340:4309377-4309648 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References