Detailed information of TA system TA098037

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VagC
• Location: 2421776..2422401
• Replicon: chromosome
• Accession: NZ_CP027331
• Organism: Escherichia coli strain 2013C-3277

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: MJ63_RS13435
• Protein ID: WP_000911330.1
• Coordinates: 2421776..2422174 (-)
• Length: 133 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: U9XQV3
• Locus tag: MJ63_RS13440
• Protein ID: WP_000450524.1
• Coordinates: 2422174..2422401 (-)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MJ63_RS13415	2417654..2417854	+	201	WP_000383836.1	YpfN family protein	-
MJ63_RS13420	2417964..2418662	-	699	WP_000679812.1	esterase	-
MJ63_RS13425	2418736..2420751	-	2016	WP_000829332.1	tRNA cytosine(34) acetyltransferase TmcA	-
MJ63_RS13430	2420766..2421629	-	864	WP_001267508.1	neutral zinc metallopeptidase	-
MJ63_RS13435	2421776..2422174	-	399	WP_000911330.1	tRNA(fMet)-specific endonuclease VapC	Toxin
MJ63_RS13440	2422174..2422401	-	228	WP_000450524.1	toxin-antitoxin system antitoxin VapB	Antitoxin
MJ63_RS13445	2422555..2423268	-	714	WP_001295467.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
MJ63_RS13450	2423481..2424515	-	1035	WP_032345214.1	outer membrane protein assembly factor BamC	-
MJ63_RS13455	2424532..2425410	-	879	WP_001311023.1	4-hydroxy-tetrahydrodipicolinate synthase	-
MJ63_RS13460	2425556..2426128	+	573	WP_000176187.1	glycine cleavage system transcriptional repressor	-
MJ63_RS13465	2426128..2426598	+	471	WP_001068682.1	thioredoxin-dependent thiol peroxidase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (5-125)

Antitoxin

• SpoVT-AbrB domain (7-52)

Sequences

Toxin

Protein

• Length: 133 a.a.
• Molecular weight: 14894.25 Da
• Isoelectric Point: 9.2216

>T98037 WP_000911330.1 NZ_CP027331:c2422174-2421776 [Escherichia coli]
MLKFMLDTNICIFTIKNKPVHVRERFNLNSGRMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRLVVLDYDSAAATHT
GQIRAELARQGRPVGPFDQMIAGHARSRGLIVVTNNTREFERVAGIRLEDWS

Nucleotide

• Length: 399 bp

>T98037 NZ_CP027331:c2422174-2421776 [Escherichia coli]
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACTATTAAGAATAAACCAGTACATGTCAGAGAGCGGTTTAA
CCTGAATTCTGGCCGGATGTGTATAAGTTCTGTAACATTGATGGAGCTTATCTATGGGGCAGAAAAAAGTCAGATGCCAG
AACGCAATTTGGCGGTTATTGAAGGTTTCGTATCTCGTTTGGTAGTGCTTGATTATGATAGTGCTGCTGCGACGCATACC
GGGCAAATCAGGGCCGAGCTTGCCCGGCAGGGAAGGCCTGTTGGACCTTTTGACCAGATGATAGCGGGACATGCTCGCAG
TCGCGGTTTGATTGTGGTTACCAACAATACCCGAGAGTTTGAGCGAGTGGCGGGAATCAGACTAGAAGACTGGAGCTAA

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 8498.61 Da
• Isoelectric Point: 4.3867

>AT98037 WP_000450524.1 NZ_CP027331:c2422401-2422174 [Escherichia coli]
METTVFLSNRSQAVRLPKAVALPEDVKKVEIIAIGRTRIITPAGESWDSWFDGENVSADFMDIRDQPAMQERESF

Nucleotide

• Length: 228 bp

>AT98037 NZ_CP027331:c2422401-2422174 [Escherichia coli]
ATGGAAACTACTGTATTTTTAAGTAATCGCAGTCAGGCCGTCAGATTACCGAAAGCGGTCGCTCTGCCAGAAGACGTTAA
GAAAGTAGAAATTATTGCGATTGGTCGTACAAGAATCATCACTCCCGCCGGTGAGTCCTGGGACAGTTGGTTTGATGGCG
AAAATGTGAGTGCGGATTTTATGGATATCCGTGATCAACCCGCAATGCAGGAAAGGGAATCATTTTGA

Structures

Antitoxin

• AlphaFold DB: A0A829CM33