Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4051817..4052088 | Replicon | chromosome |
| Accession | NZ_CP027325 | ||
| Organism | Escherichia coli strain 2013C-4830 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4051855..4051958 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4051817..4052088 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N65_RS21710 | 4048975..4050413 | + | 1439 | Protein_3943 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6N65_RS21715 | 4050531..4050767 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6N65_RS21720 | 4050872..4051063 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6N65_RS21725 | 4051064..4051720 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 4051817..4052088 | + | 272 | - | - | Antitoxin |
| - | 4051855..4051958 | - | 104 | - | - | Toxin |
| C6N65_RS21730 | 4052116..4052457 | - | 342 | WP_000976472.1 | YebY family protein | - |
| C6N65_RS21735 | 4052470..4053342 | - | 873 | WP_032207804.1 | copper homeostasis membrane protein CopD | - |
| C6N65_RS21740 | 4053346..4053720 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C6N65_RS21745 | 4053859..4054089 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6N65_RS21750 | 4054191..4054847 | + | 657 | WP_032207802.1 | carbon-nitrogen hydrolase family protein | - |
| C6N65_RS21755 | 4054871..4055533 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97996 NZ_CP027325:c4051958-4051855 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCACCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCACCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97996 NZ_CP027325:4051817-4052088 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGTGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGTGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
