Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1158623..1158894 | Replicon | chromosome |
| Accession | NZ_CP027323 | ||
| Organism | Escherichia coli strain 2013C-3033 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1158753..1158856 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1158623..1158894 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N24_RS06295 | 1155178..1155840 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6N24_RS06300 | 1155864..1156520 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6N24_RS06305 | 1156622..1156852 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6N24_RS06310 | 1156991..1157365 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6N24_RS06315 | 1157369..1158241 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6N24_RS06320 | 1158254..1158595 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1158623..1158894 | - | 272 | - | - | Antitoxin |
| - | 1158753..1158856 | + | 104 | - | - | Toxin |
| C6N24_RS06325 | 1158991..1159647 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6N24_RS06330 | 1159648..1159839 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6N24_RS06335 | 1159944..1160180 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6N24_RS06340 | 1160298..1161737 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97960 NZ_CP027323:1158753-1158856 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97960 NZ_CP027323:c1158894-1158623 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
