Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 261571..261839 | Replicon | chromosome |
| Accession | NZ_CP027319 | ||
| Organism | Escherichia coli strain 2014C-3084 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 261698..261801 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 261571..261839 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAG01_RS01485 | 258124..258786 | - | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
| AAG01_RS01490 | 258810..259466 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AAG01_RS01495 | 259568..259798 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AAG01_RS01500 | 259937..260311 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| AAG01_RS01505 | 260315..261187 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| AAG01_RS01510 | 261200..261541 | + | 342 | WP_000976475.1 | YebY family protein | - |
| - | 261571..261839 | - | 269 | - | - | Antitoxin |
| - | 261698..261801 | + | 104 | - | - | Toxin |
| AAG01_RS01515 | 261936..262592 | + | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| AAG01_RS01520 | 262593..262784 | - | 192 | WP_001313035.1 | YebW family protein | - |
| AAG01_RS01525 | 262889..263125 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AAG01_RS01530 | 263243..264682 | - | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | stx2A / stx2B / nleC | 177447..277678 | 100231 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97919 NZ_CP027319:261698-261801 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT97919 NZ_CP027319:c261839-261571 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
