Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 605415..605686 | Replicon | chromosome |
| Accession | NZ_CP027312 | ||
| Organism | Escherichia coli strain 2013C-3181 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 605545..605648 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 605415..605686 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ73_RS03040 | 601970..602632 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MJ73_RS03045 | 602656..603312 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| MJ73_RS03050 | 603414..603644 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MJ73_RS03055 | 603783..604157 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| MJ73_RS03060 | 604161..605033 | + | 873 | WP_045171712.1 | copper homeostasis membrane protein CopD | - |
| MJ73_RS03065 | 605046..605387 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 605415..605686 | - | 272 | - | - | Antitoxin |
| - | 605545..605648 | + | 104 | - | - | Toxin |
| MJ73_RS03070 | 605783..606439 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| MJ73_RS03075 | 606440..606631 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MJ73_RS03080 | 606735..606971 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| MJ73_RS03085 | 607089..608528 | - | 1440 | WP_106918721.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97863 NZ_CP027312:605545-605648 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97863 NZ_CP027312:c605686-605415 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
