Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3994056..3994327 | Replicon | chromosome |
| Accession | NZ_CP027310 | ||
| Organism | Escherichia coli strain 2014C-4135 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3994094..3994197 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3994056..3994327 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N22_RS20530 | 3991213..3992652 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6N22_RS20535 | 3992770..3993006 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6N22_RS20540 | 3993111..3993302 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6N22_RS20545 | 3993303..3993959 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3994056..3994327 | + | 272 | - | - | Antitoxin |
| - | 3994094..3994197 | - | 104 | - | - | Toxin |
| C6N22_RS20550 | 3994355..3994696 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C6N22_RS20555 | 3994709..3995581 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6N22_RS20560 | 3995585..3995959 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6N22_RS20565 | 3996098..3996328 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6N22_RS20570 | 3996430..3997086 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| C6N22_RS20575 | 3997110..3997772 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97847 NZ_CP027310:c3994197-3994094 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97847 NZ_CP027310:3994056-3994327 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
