Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1119894..1120165 | Replicon | chromosome |
| Accession | NZ_CP027307 | ||
| Organism | Escherichia coli strain 2015C-3108 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1120024..1120127 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1119894..1120165 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N27_RS05980 | 1116449..1117111 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6N27_RS05985 | 1117135..1117791 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6N27_RS05990 | 1117893..1118123 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6N27_RS05995 | 1118262..1118636 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6N27_RS06000 | 1118640..1119512 | + | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| C6N27_RS06005 | 1119525..1119866 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1119894..1120165 | - | 272 | - | - | Antitoxin |
| - | 1120024..1120127 | + | 104 | - | - | Toxin |
| C6N27_RS06010 | 1120262..1120918 | + | 657 | WP_032272255.1 | protein-serine/threonine phosphatase | - |
| C6N27_RS06015 | 1120919..1121110 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6N27_RS06020 | 1121215..1121451 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6N27_RS06025 | 1121569..1123008 | - | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97806 NZ_CP027307:1120024-1120127 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97806 NZ_CP027307:c1120165-1119894 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
