Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3464675..3464823 | Replicon | chromosome |
| Accession | NZ_CP027225 | ||
| Organism | Phytobacter sp. SCO41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3464675..3464777 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3464675..3464823 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5523_RS16860 | 3459953..3460138 | + | 186 | WP_108701594.1 | DUF1482 family protein | - |
| C5523_RS16865 | 3460174..3460524 | + | 351 | WP_172960904.1 | Rrf2 family transcriptional regulator | - |
| C5523_RS16870 | 3460663..3463170 | + | 2508 | WP_108701595.1 | exonuclease | - |
| C5523_RS16875 | 3463235..3463507 | + | 273 | WP_107222989.1 | excisionase | - |
| C5523_RS16880 | 3463482..3464588 | + | 1107 | WP_108701596.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3464675..3464777 | - | 103 | - | - | Toxin |
| - | 3464675..3464823 | + | 149 | - | - | Antitoxin |
| C5523_RS16885 | 3464934..3465275 | - | 342 | WP_108701597.1 | YebY family protein | - |
| C5523_RS16890 | 3465290..3466159 | - | 870 | WP_079496722.1 | copper homeostasis membrane protein CopD | - |
| C5523_RS16895 | 3466161..3466535 | - | 375 | WP_108701598.1 | CopC domain-containing protein YobA | - |
| C5523_RS16900 | 3466673..3466903 | + | 231 | WP_039078743.1 | DNA polymerase III subunit theta | - |
| C5523_RS16905 | 3466900..3467577 | + | 678 | WP_039078742.1 | exodeoxyribonuclease X | - |
| C5523_RS16910 | 3467574..3469634 | - | 2061 | WP_107222992.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | hsiC1/vipB / hsiB1/vipA / flhA / cheZ / cheY / cheB / cheR / cheW / cheA / motB / motA / flhC / flhD | 3257506..3577331 | 319825 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T97709 NZ_CP027225:c3464777-3464675 [Phytobacter sp. SCO41]
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT97709 NZ_CP027225:3464675-3464823 [Phytobacter sp. SCO41]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
