Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992714..1992985 | Replicon | chromosome |
| Accession | NZ_CP027219 | ||
| Organism | Escherichia coli strain 2015C-3163 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1992844..1992947 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992714..1992985 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H73_RS10775 | 1989269..1989931 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6H73_RS10780 | 1989955..1990611 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6H73_RS10785 | 1990713..1990943 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6H73_RS10790 | 1991082..1991456 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| C6H73_RS10795 | 1991460..1992332 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6H73_RS10800 | 1992345..1992686 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1992714..1992985 | - | 272 | - | - | Antitoxin |
| - | 1992844..1992947 | + | 104 | - | - | Toxin |
| C6H73_RS10805 | 1993082..1993738 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| C6H73_RS10810 | 1993739..1993930 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6H73_RS10815 | 1994035..1994271 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6H73_RS10820 | 1994389..1995828 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97649 NZ_CP027219:1992844-1992947 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97649 NZ_CP027219:c1992985-1992714 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACATATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACATATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
