Detailed information of TA system TA097638

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RelE(toxin)
• Location: 3007498..3007960
• Replicon: chromosome
• Accession: NZ_CP027218
• Organism: Pseudomonas sp. DTU12.3

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: C2E19_RS13780
• Protein ID: WP_129396117.1
• Coordinates: 3007498..3007776 (-)
• Length: 93 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: C2E19_RS13785
• Protein ID: WP_128614194.1
• Coordinates: 3007766..3007960 (-)
• Length: 65 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C2E19_RS13780	3007498..3007776	-	279	WP_129396117.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
C2E19_RS13785	3007766..3007960	-	195	WP_128614194.1	stability determinant	Antitoxin
C2E19_RS13790	3008215..3009162	-	948	WP_129393089.1	transporter	-
C2E19_RS13795	3009373..3010470	+	1098	WP_129393092.1	AraC family transcriptional regulator	-
C2E19_RS13800	3010783..3011670	+	888	WP_129393095.1	Dyp-type peroxidase	-
C2E19_RS13805	3011681..3012646	+	966	WP_129393098.1	Gfo/Idh/MocA family oxidoreductase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (3-88)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 93 a.a.
• Molecular weight: 10431.84 Da
• Isoelectric Point: 10.1371

>T97638 WP_129396117.1 NZ_CP027218:c3007776-3007498 [Pseudomonas sp. DTU12.3]
MPLEWSNQALDDLADIIDYIEQHNSNASAALQRKVGAATQRLSSIPFGYRSGRVPGTREMVVNSNYLLVYRVNGRIKILT
LVHTRQQYPRTS

Nucleotide

• Length: 279 bp

>T97638 NZ_CP027218:c3007776-3007498 [Pseudomonas sp. DTU12.3]
CTGCCGCTTGAATGGAGCAATCAGGCTCTGGACGATCTGGCTGACATTATCGATTACATTGAACAACACAATTCCAACGC
TTCAGCGGCTTTGCAGCGCAAGGTGGGTGCAGCAACGCAAAGGCTTTCATCAATTCCCTTTGGTTACAGGTCCGGTCGAG
TGCCAGGCACTCGGGAAATGGTGGTCAATTCAAACTATCTGCTGGTCTATCGAGTGAACGGGCGTATCAAAATACTGACG
TTAGTCCACACCAGACAACAATACCCACGAACCTCATAA

Antitoxin

Protein

• Length: 65 a.a.
• Molecular weight: 7524.43 Da
• Isoelectric Point: 4.6258

>AT97638 WP_128614194.1 NZ_CP027218:c3007960-3007766 [Pseudomonas sp. DTU12.3]
MSILLSPFYSEFESEEEAESYDRWFRAKVQAALDDPRPGIPHEEAMVRLDQLLEEKRKNRRAAA

Nucleotide

• Length: 195 bp

>AT97638 NZ_CP027218:c3007960-3007766 [Pseudomonas sp. DTU12.3]
ATGAGCATATTGCTTTCCCCGTTTTATTCTGAGTTCGAATCCGAAGAAGAGGCAGAGAGCTACGATCGCTGGTTTCGTGC
CAAGGTGCAGGCAGCACTTGATGATCCTCGCCCGGGCATTCCCCATGAGGAAGCCATGGTGCGGCTCGACCAATTATTAG
AAGAGAAACGCAAGAATCGACGCGCTGCCGCTTGA