Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2060823..2061094 | Replicon | chromosome |
| Accession | NZ_CP027205 | ||
| Organism | Escherichia coli strain WCHEC025943 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2060953..2061056 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2060823..2061094 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXB56_RS13540 | 2057378..2058040 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CXB56_RS13545 | 2058064..2058720 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXB56_RS13550 | 2058822..2059052 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXB56_RS13555 | 2059191..2059565 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CXB56_RS13560 | 2059569..2060441 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CXB56_RS13565 | 2060454..2060795 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2060823..2061094 | - | 272 | - | - | Antitoxin |
| - | 2060953..2061056 | + | 104 | - | - | Toxin |
| CXB56_RS13570 | 2061191..2061847 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| CXB56_RS13575 | 2061848..2062039 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CXB56_RS13580 | 2062144..2062380 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CXB56_RS13585 | 2062498..2063937 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97621 NZ_CP027205:2060953-2061056 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97621 NZ_CP027205:c2061094-2060823 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
