Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2956038..2956183 | Replicon | chromosome |
| Accession | NZ_CP027189 | ||
| Organism | Klebsiella pneumoniae strain KPHS1249 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2956074..2956176 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2956038..2956183 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5Z24_RS14625 | 2951168..2953228 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C5Z24_RS14630 | 2953232..2953891 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| C5Z24_RS14635 | 2953970..2954200 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C5Z24_RS14640 | 2954313..2954687 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C5Z24_RS14645 | 2954691..2955560 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| C5Z24_RS14650 | 2955577..2955915 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2956038..2956183 | - | 146 | - | - | Antitoxin |
| - | 2956074..2956176 | + | 103 | - | - | Toxin |
| C5Z24_RS27125 | 2956551..2956694 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C5Z24_RS14660 | 2956799..2957767 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| C5Z24_RS14665 | 2957924..2958577 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| C5Z24_RS14670 | 2958574..2958765 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C5Z24_RS14675 | 2958863..2959102 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C5Z24_RS14680 | 2959218..2960651 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T97598 NZ_CP027189:2956074-2956176 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT97598 NZ_CP027189:c2956183-2956038 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
