Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2335768..2335913 | Replicon | chromosome |
| Accession | NZ_CP027160 | ||
| Organism | Klebsiella pneumoniae strain AR_0361 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2335775..2335877 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2335768..2335913 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSB98_RS12625 | 2331300..2332733 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CSB98_RS12630 | 2332849..2333088 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CSB98_RS12635 | 2333186..2333377 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CSB98_RS12640 | 2333374..2334027 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| CSB98_RS12645 | 2334184..2335152 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CSB98_RS29395 | 2335257..2335400 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2335768..2335913 | + | 146 | - | - | Antitoxin |
| - | 2335775..2335877 | - | 103 | - | - | Toxin |
| CSB98_RS12655 | 2336036..2336374 | - | 339 | WP_002911404.1 | YebY family protein | - |
| CSB98_RS12660 | 2336391..2337260 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| CSB98_RS12665 | 2337264..2337638 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CSB98_RS12670 | 2337751..2337981 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CSB98_RS12675 | 2338060..2338719 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CSB98_RS12680 | 2338723..2340783 | - | 2061 | WP_032422099.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T97507 NZ_CP027160:c2335877-2335775 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT97507 NZ_CP027160:2335768-2335913 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
