Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4171473..4171618 | Replicon | chromosome |
| Accession | NZ_CP027146 | ||
| Organism | Klebsiella pneumoniae strain AR_0363 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4171509..4171611 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4171473..4171618 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC00_RS20960 | 4166603..4168663 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CSC00_RS20965 | 4168667..4169326 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CSC00_RS20970 | 4169405..4169635 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CSC00_RS20975 | 4169748..4170122 | + | 375 | WP_023286640.1 | CopC domain-containing protein YobA | - |
| CSC00_RS20980 | 4170126..4170995 | + | 870 | WP_023286639.1 | copper homeostasis membrane protein CopD | - |
| CSC00_RS20985 | 4171012..4171350 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 4171473..4171618 | - | 146 | - | - | Antitoxin |
| - | 4171509..4171611 | + | 103 | - | - | Toxin |
| CSC00_RS31285 | 4171985..4172128 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CSC00_RS20995 | 4172233..4173201 | - | 969 | WP_074194451.1 | VirK/YbjX family protein | - |
| CSC00_RS21000 | 4173358..4174011 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| CSC00_RS21005 | 4174008..4174199 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CSC00_RS21010 | 4174297..4174536 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CSC00_RS21015 | 4174652..4176085 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T97492 NZ_CP027146:4171509-4171611 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT97492 NZ_CP027146:c4171618-4171473 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
