Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 4328911..4329437 | Replicon | chromosome |
| Accession | NZ_CP027140 | ||
| Organism | Escherichia coli strain AR_0369 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | CSC06_RS24485 | Protein ID | WP_000323025.1 |
| Coordinates | 4329150..4329437 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | CSC06_RS24480 | Protein ID | WP_000534858.1 |
| Coordinates | 4328911..4329150 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC06_RS24440 | 4324097..4324324 | + | 228 | WP_000476993.1 | transcriptional regulator | - |
| CSC06_RS24445 | 4324308..4324829 | + | 522 | WP_000705349.1 | hypothetical protein | - |
| CSC06_RS24450 | 4324810..4325775 | + | 966 | WP_000054504.1 | hypothetical protein | - |
| CSC06_RS24455 | 4325816..4326235 | + | 420 | WP_001151196.1 | DUF977 family protein | - |
| CSC06_RS24460 | 4326269..4327609 | + | 1341 | WP_000589012.1 | ISNCY family transposase | - |
| CSC06_RS24470 | 4328046..4328378 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| CSC06_RS24475 | 4328581..4328886 | - | 306 | WP_071527819.1 | hypothetical protein | - |
| CSC06_RS24480 | 4328911..4329150 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| CSC06_RS24485 | 4329150..4329437 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| CSC06_RS24490 | 4329509..4329664 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CSC06_RS24495 | 4329881..4330132 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| CSC06_RS24500 | 4330199..4330477 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| CSC06_RS24505 | 4330479..4331528 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| CSC06_RS24510 | 4331542..4332294 | + | 753 | WP_001047135.1 | antitermination protein | - |
| CSC06_RS26290 | 4332572..4332661 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| CSC06_RS24515 | 4332716..4332928 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| CSC06_RS24520 | 4333229..4333444 | + | 216 | WP_105394433.1 | cold shock-like protein CspB | - |
| CSC06_RS26730 | 4333808..4333978 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| CSC06_RS24525 | 4334198..4334413 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4317620..4358652 | 41032 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T97463 WP_000323025.1 NZ_CP027140:4329150-4329437 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T97463 NZ_CP027140:4329150-4329437 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT97463 WP_000534858.1 NZ_CP027140:4328911-4329150 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT97463 NZ_CP027140:4328911-4329150 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|