Detailed information of TA system TA097406

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): ccdAB/CcdA(antitoxin)
• Location: 839211..839698
• Replicon: chromosome
• Accession: NZ_CP027134
• Organism: Escherichia coli strain AR_0372

Toxin (Protein)

• Gene name: ccdB
• Uniprot ID: -
• Locus tag: CSC09_RS06170
• Protein ID: WP_001520461.1
• Coordinates: 839447..839698 (+)
• Length: 84 a.a.

Antitoxin (Protein)

• Gene name: ccdA
• Uniprot ID: A0A2T1MJK4
• Locus tag: CSC09_RS06165
• Protein ID: WP_001520458.1
• Coordinates: 839211..839444 (+)
• Length: 78 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CSC09_RS06140	834284..834571	+	288	WP_000203747.1	ferredoxin-like protein FixX	-
CSC09_RS06145	834630..835961	+	1332	WP_001520455.1	MFS transporter	-
CSC09_RS06150	836069..836599	+	531	WP_021522993.1	glutathione-regulated potassium-efflux system oxidoreductase KefF	-
CSC09_RS06155	836592..838454	+	1863	WP_000377113.1	glutathione-regulated potassium-efflux system protein KefC	-
CSC09_RS06160	838646..839125	+	480	WP_000624375.1	type 3 dihydrofolate reductase	-
CSC09_RS06165	839211..839444	+	234	WP_001520458.1	type II toxin-antitoxin system CcdA family antitoxin	Antitoxin
CSC09_RS06170	839447..839698	+	252	WP_001520461.1	CcdB family protein	Toxin
CSC09_RS06175	839758..840606	-	849	WP_000257196.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH	-
CSC09_RS06180	840613..840990	-	378	WP_000610901.1	Co2+/Mg2+ efflux protein ApaG	-
CSC09_RS06185	840993..841814	-	822	WP_001065381.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
CSC09_RS06190	841811..842800	-	990	WP_001520462.1	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	-
CSC09_RS06195	842800..844086	-	1287	WP_000800457.1	peptidylprolyl isomerase SurA	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin CcdB (2-82)

Antitoxin

• Post-segregation antitoxin CcdA (8-77)

Sequences

Toxin

Protein

• Length: 84 a.a.
• Molecular weight: 9482.12 Da
• Isoelectric Point: 10.4134

>T97406 WP_001520461.1 NZ_CP027134:839447-839698 [Escherichia coli]
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALG
TKF

Nucleotide

• Length: 252 bp

>T97406 NZ_CP027134:839447-839698 [Escherichia coli]
ATGCAATTTACGGTATACCGCAGTCGCGGCAGGAACGCCGCGTTTCCCTTTGTTATCGATGTTACCAGCGACATTATTGG
TGAGATTAATCGCCGTATTGTTATTCCATTAACACCTATTGAACGATTTAGCCGTATTCGCCCACCAGAACGGCTTAACC
CAATTCTTTTACTGGTAGATGGCAAAGAATATGTGCTCATGACGCATGAGACTGCAACTGTTCCAGTTAACGCGCTGGGA
ACGAAATTTTGA

Antitoxin

Protein

• Length: 78 a.a.
• Molecular weight: 8560.61 Da
• Isoelectric Point: 5.8062

>AT97406 WP_001520458.1 NZ_CP027134:839211-839444 [Escherichia coli]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLMVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF

Nucleotide

• Length: 234 bp

>AT97406 NZ_CP027134:839211-839444 [Escherichia coli]
ATGACTGCAAAACGTACCACACAAAGTGTGACCGTCACCGTCGACCGTGAGTTAGTCAATCGCGCTCGTGATGCAGGCTT
AAATATGAGCGCCACCCTTATGGTTGCGCTCAATGCTGAACTTAAAAAACATGCAGCAACACGTTGGCGTGAAGAGAACG
CAGAAGCTATCGCTGCGTTAAATCAATTGGCTGATGAAACCGGATGTTTCTCTGATGAGTACCGGAGCTTCTAG

Structures

Antitoxin

• AlphaFold DB: A0A2T1MJK4