Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 206805..207076 | Replicon | chromosome |
| Accession | NZ_CP027126 | ||
| Organism | Escherichia coli strain AR_0374 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 206935..207038 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 206805..207076 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC11_RS01410 | 203360..204022 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CSC11_RS01415 | 204046..204702 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CSC11_RS01420 | 204804..205034 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CSC11_RS01425 | 205173..205547 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CSC11_RS01430 | 205551..206423 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| CSC11_RS01435 | 206436..206777 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 206805..207076 | - | 272 | - | - | Antitoxin |
| - | 206935..207038 | + | 104 | - | - | Toxin |
| CSC11_RS01440 | 207173..207829 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| CSC11_RS01445 | 207830..208021 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CSC11_RS01450 | 208126..208362 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CSC11_RS01455 | 208480..209919 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97360 NZ_CP027126:206935-207038 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97360 NZ_CP027126:c207076-206805 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
