Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1969734..1970005 | Replicon | chromosome |
| Accession | NZ_CP027118 | ||
| Organism | Escherichia coli strain 26561 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1969864..1969967 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1969734..1970005 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYQ10_RS10040 | 1966289..1966951 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CYQ10_RS10045 | 1966975..1967631 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CYQ10_RS10050 | 1967733..1967963 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CYQ10_RS10055 | 1968102..1968476 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CYQ10_RS10060 | 1968480..1969352 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| CYQ10_RS10065 | 1969365..1969706 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1969734..1970005 | - | 272 | - | - | Antitoxin |
| - | 1969864..1969967 | + | 104 | - | - | Toxin |
| CYQ10_RS10070 | 1970102..1970758 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| CYQ10_RS10075 | 1970759..1970950 | - | 192 | WP_000457842.1 | YebW family protein | - |
| CYQ10_RS10080 | 1971055..1971291 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CYQ10_RS10085 | 1971409..1972848 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97340 NZ_CP027118:1969864-1969967 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97340 NZ_CP027118:c1970005-1969734 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
