Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3177273..3177476 | Replicon | chromosome |
| Accession | NZ_CP027111 | ||
| Organism | Enterobacter hormaechei strain BW | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3177366..3177469 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3177273..3177476 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5I89_RS15005 | 3173810..3174472 | - | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
| C5I89_RS15010 | 3174497..3175147 | - | 651 | WP_045341276.1 | carbon-nitrogen hydrolase family protein | - |
| C5I89_RS15015 | 3175259..3175489 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| C5I89_RS15020 | 3175627..3175998 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| C5I89_RS15025 | 3176000..3176869 | + | 870 | WP_045341273.1 | copper homeostasis membrane protein CopD | - |
| C5I89_RS15030 | 3176886..3177224 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 3177273..3177476 | - | 204 | - | - | Antitoxin |
| - | 3177366..3177469 | + | 104 | - | - | Toxin |
| C5I89_RS15035 | 3177547..3178632 | - | 1086 | WP_161503863.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| C5I89_RS15040 | 3178601..3178873 | - | 273 | WP_023300430.1 | hypothetical protein | - |
| C5I89_RS15045 | 3178994..3179515 | - | 522 | WP_049125635.1 | hypothetical protein | - |
| C5I89_RS15050 | 3179572..3179784 | - | 213 | WP_161503862.1 | TraR/DksA family transcriptional regulator | - |
| C5I89_RS15055 | 3179876..3180067 | - | 192 | WP_161503861.1 | DUF1382 family protein | - |
| C5I89_RS15060 | 3180064..3180381 | - | 318 | WP_161503860.1 | hypothetical protein | - |
| C5I89_RS15065 | 3180365..3180880 | - | 516 | WP_161503859.1 | HNH endonuclease | - |
| C5I89_RS15070 | 3180877..3181095 | - | 219 | WP_161503858.1 | hypothetical protein | - |
| C5I89_RS15075 | 3181092..3181751 | - | 660 | WP_161503857.1 | DNA methyltransferase | - |
| C5I89_RS15080 | 3181748..3181900 | - | 153 | WP_049125852.1 | DUF1317 family protein | - |
| C5I89_RS15085 | 3181897..3182325 | - | 429 | WP_121926622.1 | regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3171753..3230568 | 58815 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97316 NZ_CP027111:3177366-3177469 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT97316 NZ_CP027111:c3177476-3177273 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
