Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 879861..880029 | Replicon | chromosome |
| Accession | NZ_CP027107 | ||
| Organism | Cronobacter sakazakii strain CS-931 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 879923..880026 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 879861..880029 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CsakCS931_RS04150 | 875012..877075 | + | 2064 | WP_007900686.1 | oligopeptidase B | - |
| CsakCS931_RS04155 | 877072..877734 | - | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| CsakCS931_RS04160 | 877806..878036 | - | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| CsakCS931_RS04165 | 878183..878557 | + | 375 | WP_007900668.1 | CopC domain-containing protein YobA | - |
| CsakCS931_RS04170 | 878562..879431 | + | 870 | WP_097573582.1 | copper homeostasis membrane protein CopD | - |
| CsakCS931_RS04175 | 879446..879784 | + | 339 | WP_004386669.1 | YebY family protein | - |
| - | 879861..880029 | - | 169 | - | - | Antitoxin |
| - | 879923..880026 | + | 104 | - | - | Toxin |
| CsakCS931_RS04180 | 880253..880813 | + | 561 | WP_032968251.1 | hypothetical protein | - |
| CsakCS931_RS04185 | 880767..881102 | + | 336 | WP_004386671.1 | hypothetical protein | - |
| CsakCS931_RS04190 | 881898..882542 | + | 645 | WP_038860108.1 | metallophosphoesterase | - |
| CsakCS931_RS04195 | 882543..882734 | - | 192 | WP_004386675.1 | YebW family protein | - |
| CsakCS931_RS04200 | 882859..883098 | - | 240 | WP_004386676.1 | YebV family protein | - |
| CsakCS931_RS04205 | 883211..884653 | - | 1443 | WP_097573584.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97298 NZ_CP027107:879923-880026 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT97298 NZ_CP027107:c880029-879861 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
