Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 3722604..3723258 Replicon chromosome
Accession NZ_CP027105
Organism Escherichia coli strain RM14721

Toxin (Protein)


Gene name cptA Uniprot ID S1EEB2
Locus tag C5097_RS19515 Protein ID WP_000244777.1
Coordinates 3722604..3723011 (-) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S1PPB1
Locus tag C5097_RS19520 Protein ID WP_000354046.1
Coordinates 3722992..3723258 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C5097_RS19495 3718561..3720294 - 1734 WP_000813200.1 single-stranded-DNA-specific exonuclease RecJ -
C5097_RS19500 3720300..3721010 - 711 WP_086625346.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
C5097_RS19505 3721035..3721931 - 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
C5097_RS19510 3722043..3722564 + 522 WP_001055874.1 flavodoxin FldB -
C5097_RS19515 3722604..3723011 - 408 WP_000244777.1 toxin CptA Toxin
C5097_RS19520 3722992..3723258 - 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
C5097_RS19525 3723501..3724481 + 981 WP_000886062.1 tRNA-modifying protein YgfZ -
C5097_RS19530 3724677..3725336 - 660 WP_000250274.1 hemolysin III family protein -
C5097_RS19535 3725500..3725811 - 312 WP_001182957.1 N(4)-acetylcytidine aminohydrolase -
C5097_RS19540 3725856..3727289 + 1434 WP_001336277.1 6-phospho-beta-glucosidase BglA -
C5097_RS19545 3727346..3728089 - 744 WP_000951964.1 SDR family oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16031.96 Da        Isoelectric Point: 11.5202

>T97282 WP_000244777.1 NZ_CP027105:c3723011-3722604 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDGGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

>T97282 NZ_CP027105:c3723011-3722604 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>AT97282 WP_000354046.1 NZ_CP027105:c3723258-3722992 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT97282 NZ_CP027105:c3723258-3722992 [Escherichia coli]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9LFV7

Antitoxin

Source ID Structure
PDB 6B58
PDB 1X6I
PDB 1X6J
PDB 6C12
AlphaFold DB A0A7U9QD57

References