Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2662617..2662888 | Replicon | chromosome |
| Accession | NZ_CP027105 | ||
| Organism | Escherichia coli strain RM14721 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2662655..2662758 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2662617..2662888 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5097_RS14150 | 2659774..2661213 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C5097_RS14155 | 2661331..2661567 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| C5097_RS14160 | 2661672..2661863 | + | 192 | WP_001338167.1 | YebW family protein | - |
| C5097_RS14165 | 2661864..2662520 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2662617..2662888 | + | 272 | - | - | Antitoxin |
| - | 2662655..2662758 | - | 104 | - | - | Toxin |
| C5097_RS14170 | 2662916..2663257 | - | 342 | WP_072145846.1 | YebY family protein | - |
| C5097_RS14175 | 2663270..2664142 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| C5097_RS14180 | 2664146..2664520 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C5097_RS14185 | 2664659..2664889 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C5097_RS14190 | 2664991..2665647 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C5097_RS14195 | 2665671..2666333 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T97273 NZ_CP027105:c2662758-2662655 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT97273 NZ_CP027105:2662617-2662888 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
