Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1891336..1891480 | Replicon | chromosome |
| Accession | NZ_CP027064 | ||
| Organism | Klebsiella variicola strain WCHKV030666 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1891372..1891474 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1891336..1891480 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLQ71_RS10520 | 1886466..1888526 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| CLQ71_RS10525 | 1888530..1889189 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| CLQ71_RS10530 | 1889268..1889498 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| CLQ71_RS10535 | 1889612..1889986 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| CLQ71_RS10540 | 1889990..1890859 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| CLQ71_RS10545 | 1890876..1891214 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1891336..1891480 | - | 145 | - | - | Antitoxin |
| - | 1891372..1891474 | + | 103 | - | - | Toxin |
| CLQ71_RS10555 | 1891859..1892002 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| CLQ71_RS10560 | 1892106..1893095 | - | 990 | WP_032691211.1 | VirK/YbjX family protein | - |
| CLQ71_RS10565 | 1893231..1893884 | + | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| CLQ71_RS10570 | 1893881..1894072 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CLQ71_RS10575 | 1894170..1894409 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CLQ71_RS10580 | 1894525..1895958 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T97203 NZ_CP027064:1891372-1891474 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT97203 NZ_CP027064:c1891480-1891336 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
