Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 635633..635778 | Replicon | chromosome |
| Accession | NZ_CP027053 | ||
| Organism | Klebsiella pneumoniae strain 2_GR_12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 635669..635771 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 635633..635778 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6D68_RS03025 | 630763..632823 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| A6D68_RS03030 | 632827..633486 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| A6D68_RS03035 | 633565..633795 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A6D68_RS03040 | 633908..634282 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A6D68_RS03045 | 634286..635155 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| A6D68_RS03050 | 635172..635510 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 635633..635778 | - | 146 | - | - | Antitoxin |
| - | 635669..635771 | + | 103 | - | - | Toxin |
| A6D68_RS31005 | 636146..636289 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| A6D68_RS03060 | 636394..637362 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| A6D68_RS03065 | 637519..638172 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| A6D68_RS03070 | 638169..638360 | - | 192 | WP_002911395.1 | YebW family protein | - |
| A6D68_RS03075 | 638458..638697 | - | 240 | WP_002911393.1 | YebV family protein | - |
| A6D68_RS03080 | 638813..640246 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T97169 NZ_CP027053:635669-635771 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT97169 NZ_CP027053:c635778-635633 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
