Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4605018..4605163 | Replicon | chromosome |
| Accession | NZ_CP027036 | ||
| Organism | Klebsiella pneumoniae strain 16_GR_13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4605025..4605127 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4605018..4605163 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6D82_RS23205 | 4600550..4601983 | + | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A6D82_RS23210 | 4602099..4602338 | + | 240 | WP_002911393.1 | YebV family protein | - |
| A6D82_RS23215 | 4602436..4602627 | + | 192 | WP_002911395.1 | YebW family protein | - |
| A6D82_RS23220 | 4602624..4603277 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| A6D82_RS23225 | 4603434..4604402 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| A6D82_RS30810 | 4604507..4604650 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4605018..4605163 | + | 146 | - | - | Antitoxin |
| - | 4605025..4605127 | - | 103 | - | - | Toxin |
| A6D82_RS23235 | 4605286..4605624 | - | 339 | WP_016529031.1 | YebY family protein | - |
| A6D82_RS23240 | 4605641..4606510 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| A6D82_RS23245 | 4606514..4606888 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A6D82_RS23250 | 4607001..4607231 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A6D82_RS23255 | 4607310..4607969 | + | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| A6D82_RS23260 | 4607973..4610033 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T97118 NZ_CP027036:c4605127-4605025 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT97118 NZ_CP027036:4605018-4605163 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
