Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | ykfI-yfjZ/CbtA-CbeA |
Location | 3543247..3543972 | Replicon | chromosome |
Accession | NZ_CP026985 | ||
Organism | Pectobacterium parmentieri strain IFB5619 |
Toxin (Protein)
Gene name | ykfI | Uniprot ID | - |
Locus tag | C5E25_RS16485 | Protein ID | WP_103808442.1 |
Coordinates | 3543247..3543567 (-) | Length | 107 a.a. |
Antitoxin (Protein)
Gene name | yfjZ | Uniprot ID | - |
Locus tag | C5E25_RS16490 | Protein ID | WP_103808441.1 |
Coordinates | 3543637..3543972 (-) | Length | 112 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C5E25_RS16465 | 3539090..3540409 | + | 1320 | WP_103808725.1 | site-specific integrase | - |
C5E25_RS16470 | 3540481..3541530 | - | 1050 | WP_103808726.1 | macro domain-containing protein | - |
C5E25_RS16475 | 3541544..3542191 | - | 648 | WP_103808727.1 | DUF4433 domain-containing protein | - |
C5E25_RS16480 | 3542296..3543129 | - | 834 | WP_121247172.1 | DUF4942 domain-containing protein | - |
C5E25_RS16485 | 3543247..3543567 | - | 321 | WP_103808442.1 | TA system toxin CbtA family protein | Toxin |
C5E25_RS16490 | 3543637..3543972 | - | 336 | WP_103808441.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
C5E25_RS16495 | 3544009..3544482 | - | 474 | WP_121247002.1 | DNA repair protein RadC | - |
C5E25_RS16500 | 3544567..3544800 | - | 234 | WP_040034648.1 | membrane protein | - |
C5E25_RS16505 | 3544818..3545291 | - | 474 | WP_103808732.1 | hypothetical protein | - |
C5E25_RS16510 | 3545327..3545896 | - | 570 | Protein_3166 | hypothetical protein | - |
C5E25_RS16515 | 3546078..3546776 | - | 699 | WP_121247005.1 | DeoR family transcriptional regulator | - |
C5E25_RS16520 | 3547146..3548021 | - | 876 | WP_103808734.1 | GTPase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12035.73 Da Isoelectric Point: 4.7768
>T96988 WP_103808442.1 NZ_CP026985:c3543567-3543247 [Pectobacterium parmentieri]
MQTSPAIPPREDNPCPSPIAVWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLANAVNFLVEKYELVRIDRNGF
NWQEQSPFLTAVDVLRARRATGLLKA
MQTSPAIPPREDNPCPSPIAVWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLANAVNFLVEKYELVRIDRNGF
NWQEQSPFLTAVDVLRARRATGLLKA
Download Length: 321 bp
>T96988 NZ_CP026985:c3543567-3543247 [Pectobacterium parmentieri]
ATGCAAACATCACCGGCAATCCCGCCACGGGAGGATAACCCCTGTCCGTCACCTATAGCCGTCTGGCAGCAACTACTGAC
TTACCTGCTGGAAAAGCACTACGGCCTGACGCTGAACGACACACCATTCTGTGAGGAAAACGTGATTCAGGAGCATATCG
ATGCTGGCATCACGCTGGCCAATGCCGTCAATTTTCTGGTGGAGAAATACGAACTGGTGCGTATCGATCGCAACGGCTTT
AACTGGCAGGAGCAATCGCCGTTTCTTACCGCCGTTGATGTTCTCCGTGCTAGACGTGCAACGGGCTTGCTCAAGGCATA
A
ATGCAAACATCACCGGCAATCCCGCCACGGGAGGATAACCCCTGTCCGTCACCTATAGCCGTCTGGCAGCAACTACTGAC
TTACCTGCTGGAAAAGCACTACGGCCTGACGCTGAACGACACACCATTCTGTGAGGAAAACGTGATTCAGGAGCATATCG
ATGCTGGCATCACGCTGGCCAATGCCGTCAATTTTCTGGTGGAGAAATACGAACTGGTGCGTATCGATCGCAACGGCTTT
AACTGGCAGGAGCAATCGCCGTTTCTTACCGCCGTTGATGTTCTCCGTGCTAGACGTGCAACGGGCTTGCTCAAGGCATA
A
Antitoxin
Download Length: 112 a.a. Molecular weight: 12643.32 Da Isoelectric Point: 5.5351
>AT96988 WP_103808441.1 NZ_CP026985:c3543972-3543637 [Pectobacterium parmentieri]
MPSSDTPEWGLKCAITPRFGARLVQEGHRLHYLEDRASIVGTFSEMEAHHLEEIFPELIKQLEQKLRSGELNPRQRGCVT
LYCNEWTCEADTLGSFGYVYIVIYPTSAATH
MPSSDTPEWGLKCAITPRFGARLVQEGHRLHYLEDRASIVGTFSEMEAHHLEEIFPELIKQLEQKLRSGELNPRQRGCVT
LYCNEWTCEADTLGSFGYVYIVIYPTSAATH
Download Length: 336 bp
>AT96988 NZ_CP026985:c3543972-3543637 [Pectobacterium parmentieri]
ATGCCATCATCGGATACCCCGGAGTGGGGATTAAAATGTGCCATCACGCCGCGATTCGGAGCCAGGCTGGTCCAGGAAGG
ACACCGCCTGCATTATCTGGAAGACCGGGCCAGCATTGTCGGTACGTTCAGCGAAATGGAAGCCCACCATCTGGAAGAGA
TCTTTCCTGAGCTGATTAAGCAGTTGGAACAAAAACTGCGCTCGGGTGAGTTGAATCCCCGTCAGCGGGGTTGCGTCACG
CTGTATTGTAACGAATGGACCTGTGAAGCCGATACGCTGGGCAGTTTTGGTTATGTATATATTGTTATTTATCCCACTTC
TGCAGCAACACACTAA
ATGCCATCATCGGATACCCCGGAGTGGGGATTAAAATGTGCCATCACGCCGCGATTCGGAGCCAGGCTGGTCCAGGAAGG
ACACCGCCTGCATTATCTGGAAGACCGGGCCAGCATTGTCGGTACGTTCAGCGAAATGGAAGCCCACCATCTGGAAGAGA
TCTTTCCTGAGCTGATTAAGCAGTTGGAACAAAAACTGCGCTCGGGTGAGTTGAATCCCCGTCAGCGGGGTTGCGTCACG
CTGTATTGTAACGAATGGACCTGTGAAGCCGATACGCTGGGCAGTTTTGGTTATGTATATATTGTTATTTATCCCACTTC
TGCAGCAACACACTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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