Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | ykfI-yfjZ/CbtA-CbeA |
Location | 3532736..3533461 | Replicon | chromosome |
Accession | NZ_CP026983 | ||
Organism | Pectobacterium parmentieri strain IFB5604 |
Toxin (Protein)
Gene name | ykfI | Uniprot ID | - |
Locus tag | C5E23_RS16420 | Protein ID | WP_103808729.1 |
Coordinates | 3532736..3533056 (-) | Length | 107 a.a. |
Antitoxin (Protein)
Gene name | yfjZ | Uniprot ID | - |
Locus tag | C5E23_RS16425 | Protein ID | WP_103808730.1 |
Coordinates | 3533126..3533461 (-) | Length | 112 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C5E23_RS16400 | 3528579..3529898 | + | 1320 | WP_103808725.1 | site-specific integrase | - |
C5E23_RS16405 | 3529970..3531019 | - | 1050 | WP_103808726.1 | macro domain-containing protein | - |
C5E23_RS16410 | 3531033..3531680 | - | 648 | WP_103808727.1 | DUF4433 domain-containing protein | - |
C5E23_RS16415 | 3531785..3532618 | - | 834 | WP_103808728.1 | DUF4942 domain-containing protein | - |
C5E23_RS16420 | 3532736..3533056 | - | 321 | WP_103808729.1 | TA system toxin CbtA family protein | Toxin |
C5E23_RS16425 | 3533126..3533461 | - | 336 | WP_103808730.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
C5E23_RS16430 | 3533501..3533974 | - | 474 | WP_103808731.1 | DNA repair protein RadC | - |
C5E23_RS16435 | 3534059..3534292 | - | 234 | WP_040034648.1 | membrane protein | - |
C5E23_RS16440 | 3534310..3534783 | - | 474 | WP_103808732.1 | hypothetical protein | - |
C5E23_RS16445 | 3534819..3535388 | - | 570 | WP_121301469.1 | hypothetical protein | - |
C5E23_RS16450 | 3535570..3536268 | - | 699 | WP_121301470.1 | DeoR family transcriptional regulator | - |
C5E23_RS16455 | 3536638..3537513 | - | 876 | WP_121301471.1 | GTPase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12066.79 Da Isoelectric Point: 4.5971
>T96978 WP_103808729.1 NZ_CP026983:c3533056-3532736 [Pectobacterium parmentieri]
MQTIPAIPSREDNPCPSPIAAWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLVNAVNFLVEKYELVRIDRDGF
NWQEQSPFLTAVDILRARRATGLLKA
MQTIPAIPSREDNPCPSPIAAWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLVNAVNFLVEKYELVRIDRDGF
NWQEQSPFLTAVDILRARRATGLLKA
Download Length: 321 bp
>T96978 NZ_CP026983:c3533056-3532736 [Pectobacterium parmentieri]
ATGCAAACCATACCTGCAATCCCGTCACGGGAGGATAACCCCTGTCCGTCACCCATAGCCGCCTGGCAGCAACTGCTGAC
CTACCTGCTGGAAAAGCACTACGGCCTGACGCTGAACGACACGCCGTTCTGTGAGGAAAACGTGATTCAGGAACATATCG
ATGCTGGCATCACGTTGGTCAATGCCGTGAATTTTCTGGTGGAAAAATACGAACTGGTGCGTATCGACCGCGACGGTTTT
AACTGGCAGGAGCAATCACCGTTTCTTACCGCTGTTGATATTCTCCGTGCCAGACGTGCTACCGGCTTGCTCAAAGCATA
A
ATGCAAACCATACCTGCAATCCCGTCACGGGAGGATAACCCCTGTCCGTCACCCATAGCCGCCTGGCAGCAACTGCTGAC
CTACCTGCTGGAAAAGCACTACGGCCTGACGCTGAACGACACGCCGTTCTGTGAGGAAAACGTGATTCAGGAACATATCG
ATGCTGGCATCACGTTGGTCAATGCCGTGAATTTTCTGGTGGAAAAATACGAACTGGTGCGTATCGACCGCGACGGTTTT
AACTGGCAGGAGCAATCACCGTTTCTTACCGCTGTTGATATTCTCCGTGCCAGACGTGCTACCGGCTTGCTCAAAGCATA
A
Antitoxin
Download Length: 112 a.a. Molecular weight: 12471.28 Da Isoelectric Point: 6.6869
>AT96978 WP_103808730.1 NZ_CP026983:c3533461-3533126 [Pectobacterium parmentieri]
MPSSDTPEWGLKCAVTPRFGARLVQEGHRLHYLADRASIVGTFSKTEAQSLERCFPELIKLLEQKLRMGELNPRQQNCVT
LHCNEWICEADTLGSVGYVYIVIYPSSAATQ
MPSSDTPEWGLKCAVTPRFGARLVQEGHRLHYLADRASIVGTFSKTEAQSLERCFPELIKLLEQKLRMGELNPRQQNCVT
LHCNEWICEADTLGSVGYVYIVIYPSSAATQ
Download Length: 336 bp
>AT96978 NZ_CP026983:c3533461-3533126 [Pectobacterium parmentieri]
ATGCCATCGTCTGATACCCCTGAATGGGGACTAAAATGTGCCGTCACTCCGCGATTCGGAGCCAGATTGGTGCAGGAAGG
TCACCGTCTGCACTATCTGGCAGACCGTGCCAGCATTGTCGGTACGTTTAGCAAAACAGAAGCCCAAAGTCTGGAACGTT
GCTTCCCTGAGCTAATTAAGCTGTTGGAACAGAAGCTACGCATGGGGGAACTGAATCCCCGTCAGCAGAACTGCGTCACG
CTGCATTGCAACGAATGGATCTGTGAAGCCGATACGCTGGGCAGTGTTGGCTACGTGTATATTGTTATCTATCCCTCTTC
TGCGGCAACACAATAA
ATGCCATCGTCTGATACCCCTGAATGGGGACTAAAATGTGCCGTCACTCCGCGATTCGGAGCCAGATTGGTGCAGGAAGG
TCACCGTCTGCACTATCTGGCAGACCGTGCCAGCATTGTCGGTACGTTTAGCAAAACAGAAGCCCAAAGTCTGGAACGTT
GCTTCCCTGAGCTAATTAAGCTGTTGGAACAGAAGCTACGCATGGGGGAACTGAATCCCCGTCAGCAGAACTGCGTCACG
CTGCATTGCAACGAATGGATCTGTGAAGCCGATACGCTGGGCAGTGTTGGCTACGTGTATATTGTTATCTATCCCTCTTC
TGCGGCAACACAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|
Antitoxin
Source | ID | Structure |
---|