Detailed information of TA system TA096960

Bioinformatically predicted

Overview

TA module

• Type: IV
• Classification (family/domain): ykfI-yfjZ/CbtA-CbeA
• Location: 3554308..3555033
• Replicon: chromosome
• Accession: NZ_CP026981
• Organism: Pectobacterium parmentieri strain IFB5485

Toxin (Protein)

• Gene name: ykfI
• Uniprot ID: -
• Locus tag: C5E21_RS16505
• Protein ID: WP_103808729.1
• Coordinates: 3554308..3554628 (-)
• Length: 107 a.a.

Antitoxin (Protein)

• Gene name: yfjZ
• Uniprot ID: -
• Locus tag: C5E21_RS16510
• Protein ID: WP_103808730.1
• Coordinates: 3554698..3555033 (-)
• Length: 112 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
-	3554308..3554628	-	321	-	-	Toxin
-	3554698..3555033	-	336	-	-	Antitoxin

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• CbtA toxin of type IV toxin-antitoxin system (1-105)

Antitoxin

• Antitoxin CbeA (7-106)

Sequences

Toxin

Protein

• Length: 107 a.a.
• Molecular weight: 12066.79 Da
• Isoelectric Point: 4.5971

>T96960 WP_103808729.1 NZ_CP026981:c3554628-3554308 [Pectobacterium parmentieri]
MQTIPAIPSREDNPCPSPIAAWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLVNAVNFLVEKYELVRIDRDGF
NWQEQSPFLTAVDILRARRATGLLKA

Nucleotide

• Length: 321 bp

>T96960 NZ_CP026981:c3554628-3554308 [Pectobacterium parmentieri]
ATGCAAACCATACCTGCAATCCCGTCACGGGAGGATAACCCCTGTCCGTCACCCATAGCCGCCTGGCAGCAACTGCTGAC
CTACCTGCTGGAAAAGCACTACGGCCTGACGCTGAACGACACGCCGTTCTGTGAGGAAAACGTGATTCAGGAACATATCG
ATGCTGGCATCACGTTGGTCAATGCCGTGAATTTTCTGGTGGAAAAATACGAACTGGTGCGTATCGACCGCGACGGTTTT
AACTGGCAGGAGCAATCACCGTTTCTTACCGCTGTTGATATTCTCCGTGCCAGACGTGCTACCGGCTTGCTCAAAGCATA
A

Antitoxin

Protein

• Length: 112 a.a.
• Molecular weight: 12471.28 Da
• Isoelectric Point: 6.6869

>AT96960 WP_103808730.1 NZ_CP026981:c3555033-3554698 [Pectobacterium parmentieri]
MPSSDTPEWGLKCAVTPRFGARLVQEGHRLHYLADRASIVGTFSKTEAQSLERCFPELIKLLEQKLRMGELNPRQQNCVT
LHCNEWICEADTLGSVGYVYIVIYPSSAATQ

Nucleotide

• Length: 336 bp

>AT96960 NZ_CP026981:c3555033-3554698 [Pectobacterium parmentieri]
ATGCCATCGTCTGATACCCCTGAATGGGGACTAAAATGTGCCGTCACTCCGCGATTCGGAGCCAGATTGGTGCAGGAAGG
TCACCGTCTGCACTATCTGGCAGACCGTGCCAGCATTGTCGGTACGTTTAGCAAAACAGAAGCCCAAAGTCTGGAACGTT
GCTTCCCTGAGCTAATTAAGCTGTTGGAACAGAAGCTACGCATGGGGGAACTGAATCCCCGTCAGCAGAACTGCGTCACG
CTGCATTGCAACGAATGGATCTGTGAAGCCGATACGCTGGGCAGTGTTGGCTACGTGTATATTGTTATCTATCCCTCTTC
TGCGGCAACACAATAA