Detailed information of TA system TA096950

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): tacAT/DUF1778(antitoxin)
• Location: 3751902..3752686
• Replicon: chromosome
• Accession: NZ_CP026980
• Organism: Pectobacterium parmentieri strain IFB5441

Toxin (Protein)

• Gene name: TacT2
• Uniprot ID: -
• Locus tag: C5E20_RS17755
• Protein ID: WP_121265928.1
• Coordinates: 3751902..3752396 (-)
• Length: 165 a.a.

Antitoxin (Protein)

• Gene name: TacA2
• Uniprot ID: -
• Locus tag: C5E20_RS17760
• Protein ID: WP_121265930.1
• Coordinates: 3752393..3752686 (-)
• Length: 98 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C5E20_RS17715	3747757..3747951	-	195	WP_039525031.1	DUF3950 domain-containing protein	-
C5E20_RS17720	3748137..3748478	+	342	WP_025919584.1	hypothetical protein	-
C5E20_RS24155	3749071..3749241	-	171	WP_162939939.1	hypothetical protein	-
C5E20_RS17730	3749383..3750126	+	744	WP_121265922.1	molybdopterin-guanine dinucleotide biosynthesis protein MobC	-
C5E20_RS17735	3750185..3750403	+	219	WP_015855076.1	type II toxin-antitoxin system antitoxin CcdA	-
C5E20_RS17740	3750406..3750711	+	306	WP_121265924.1	type II toxin-antitoxin system toxin CcdB	-
C5E20_RS17745	3751040..3751426	+	387	WP_121265926.1	hypothetical protein	-
C5E20_RS17750	3751419..3751640	+	222	WP_121268934.1	hypothetical protein	-
C5E20_RS17755	3751902..3752396	-	495	WP_121265928.1	GNAT family N-acetyltransferase	Toxin
C5E20_RS17760	3752393..3752686	-	294	WP_121265930.1	DUF1778 domain-containing protein	Antitoxin
C5E20_RS17765	3752874..3753560	-	687	WP_121265932.1	DNA primase	-
C5E20_RS17770	3754123..3755352	+	1230	WP_121265934.1	tyrosine-type recombinase/integrase	-
C5E20_RS17775	3755386..3755649	+	264	WP_121265936.1	XRE family transcriptional regulator	-
C5E20_RS17780	3755649..3755881	+	233	Protein_3411	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Integrative and Conjugative Element	-	-	3746209..3753953	7744

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• GNAT domain (66-143)

Antitoxin

• Vibrio phage ICP1, Orf50 (4-95)

Sequences

Toxin

Protein

• Length: 165 a.a.
• Molecular weight: 17752.50 Da
• Isoelectric Point: 7.3228

>T96950 WP_121265928.1 NZ_CP026980:c3752396-3751902 [Pectobacterium parmentieri]
MISAPEPLHAEHVLSSFFCGVESMDNWLKQRAMKNQVTGTSRTFVSCDDSKVLAYYSLASSAVVTNAAPGRFRRNMPDPI
PVVVLGRLAVDKSLHGQGVGRALVRDAGLRVIQVADTIGIRGMLVHALSDEAREFYLRVGFEPSPIDSMMLMVTQGDVSG
SLGM

Nucleotide

• Length: 495 bp

>T96950 NZ_CP026980:c3752396-3751902 [Pectobacterium parmentieri]
ATGATCTCTGCCCCTGAGCCACTCCACGCCGAACATGTACTATCCTCATTCTTTTGTGGCGTGGAGTCTATGGACAACTG
GCTGAAACAACGGGCGATGAAAAATCAGGTCACTGGCACATCACGAACTTTCGTCAGTTGCGATGACTCAAAAGTGTTGG
CGTATTACTCGCTCGCTTCCAGTGCCGTAGTAACGAATGCTGCCCCCGGACGTTTTCGCCGCAATATGCCCGATCCGATC
CCGGTCGTGGTGCTGGGTCGTCTGGCAGTAGATAAATCATTGCATGGTCAGGGTGTTGGCCGTGCTTTGGTACGTGATGC
TGGGCTAAGAGTGATTCAGGTTGCTGATACTATCGGCATTCGTGGGATGCTGGTTCATGCGCTGTCTGATGAAGCACGGG
AATTTTATCTGCGGGTGGGGTTTGAGCCTTCGCCGATTGACTCGATGATGCTGATGGTGACGCAGGGGGATGTCAGTGGC
TCTTTAGGTATGTAG

Antitoxin

Protein

• Length: 98 a.a.
• Molecular weight: 10884.54 Da
• Isoelectric Point: 10.1968

>AT96950 WP_121265930.1 NZ_CP026980:c3752686-3752393 [Pectobacterium parmentieri]
MPVANSVSVKRETLNLRIKPAERDLIDRAAKARGKNRTDFVLEAARAAAEEALIEQRIIMADPDAYQEFLARLDQAPAPN
AALRKTMQTLAPWEQKK

Nucleotide

• Length: 294 bp

>AT96950 NZ_CP026980:c3752686-3752393 [Pectobacterium parmentieri]
ATGCCAGTGGCGAACAGCGTTTCTGTTAAACGCGAAACATTGAATTTACGTATCAAGCCCGCTGAACGGGATCTGATTGA
TCGTGCAGCGAAGGCCAGAGGAAAAAATCGCACTGATTTTGTCCTTGAGGCCGCGCGTGCTGCCGCAGAGGAAGCGTTGA
TCGAACAACGCATCATCATGGCAGATCCCGACGCTTATCAGGAATTCCTTGCCCGTTTGGATCAGGCTCCTGCACCAAAT
GCCGCGCTGCGTAAAACCATGCAAACACTTGCACCGTGGGAGCAGAAAAAATGA