Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4620603..4620743 | Replicon | chromosome |
| Accession | NZ_CP026975 | ||
| Organism | Enterobacter cloacae complex sp. strain FDAARGOS_77 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4620638..4620741 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4620603..4620743 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MC67_RS23055 | 4617087..4617749 | - | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
| MC67_RS23060 | 4617774..4618424 | - | 651 | WP_045620326.1 | carbon-nitrogen hydrolase family protein | - |
| MC67_RS23065 | 4618535..4618765 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| MC67_RS23070 | 4618902..4619273 | + | 372 | WP_045355979.1 | CopC domain-containing protein YobA | - |
| MC67_RS23075 | 4619275..4620144 | + | 870 | WP_045404469.1 | copper homeostasis membrane protein CopD | - |
| MC67_RS23080 | 4620161..4620499 | + | 339 | WP_045404471.1 | YebY family protein | - |
| - | 4620603..4620743 | - | 141 | - | - | Antitoxin |
| - | 4620638..4620741 | + | 104 | - | - | Toxin |
| MC67_RS23085 | 4620819..4621881 | - | 1063 | Protein_4394 | tyrosine-type recombinase/integrase | - |
| MC67_RS23090 | 4622315..4623058 | + | 744 | WP_045404472.1 | hypothetical protein | - |
| MC67_RS23095 | 4623130..4623504 | + | 375 | WP_047635173.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB / gtrA | 4615030..4652370 | 37340 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96921 NZ_CP026975:4620638-4620741 [Enterobacter cloacae complex sp.]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT96921 NZ_CP026975:c4620743-4620603 [Enterobacter cloacae complex sp.]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
