Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172129..2172363 | Replicon | chromosome |
| Accession | NZ_CP026935 | ||
| Organism | Escherichia coli strain CFS3292 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2172259..2172362 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172129..2172363 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5F72_RS10390 | 2168684..2169346 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C5F72_RS10395 | 2169370..2170026 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C5F72_RS10400 | 2170128..2170358 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C5F72_RS10405 | 2170497..2170871 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C5F72_RS10410 | 2170875..2171747 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| C5F72_RS10415 | 2171760..2172101 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2172129..2172363 | - | 235 | - | - | Antitoxin |
| - | 2172259..2172362 | + | 104 | - | - | Toxin |
| C5F72_RS10420 | 2172494..2173570 | - | 1077 | WP_001189085.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| C5F72_RS10425 | 2173536..2173817 | - | 282 | WP_001311878.1 | excisionase | - |
| C5F72_RS10430 | 2173924..2174112 | - | 189 | WP_024165285.1 | DUF1187 family protein | - |
| - | 2173928..2174106 | + | 179 | NuclAT_0 | - | - |
| - | 2173928..2174106 | + | 179 | NuclAT_0 | - | - |
| - | 2173928..2174106 | + | 179 | NuclAT_0 | - | - |
| - | 2173928..2174106 | + | 179 | NuclAT_0 | - | - |
| C5F72_RS10435 | 2174105..2174299 | - | 195 | WP_010989194.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| C5F72_RS10440 | 2174363..2175415 | - | 1053 | WP_159375964.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2166627..2231780 | 65153 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96710 NZ_CP026935:2172259-2172362 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT96710 NZ_CP026935:c2172363-2172129 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
