Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 911942..912774 | Replicon | chromosome |
| Accession | NZ_CP026932 | ||
| Organism | Escherichia coli strain CFS3273 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | C5F73_RS04385 | Protein ID | WP_061355093.1 |
| Coordinates | 911942..912316 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A7ZRI0 |
| Locus tag | C5F73_RS04390 | Protein ID | WP_012139188.1 |
| Coordinates | 912406..912774 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5F73_RS04350 | 907009..907608 | + | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| C5F73_RS04355 | 907611..908588 | + | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| C5F73_RS04360 | 908585..909763 | + | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| C5F73_RS04365 | 909765..910301 | + | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| C5F73_RS04370 | 910582..911151 | - | 570 | WP_001290247.1 | DUF4942 domain-containing protein | - |
| C5F73_RS04375 | 911248..911445 | - | 198 | WP_000839281.1 | DUF957 domain-containing protein | - |
| C5F73_RS04380 | 911457..911945 | - | 489 | Protein_860 | hypothetical protein | - |
| C5F73_RS04385 | 911942..912316 | - | 375 | WP_061355093.1 | TA system toxin CbtA family protein | Toxin |
| C5F73_RS04390 | 912406..912774 | - | 369 | WP_012139188.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin |
| C5F73_RS04395 | 912854..913075 | - | 222 | WP_001556363.1 | DUF987 domain-containing protein | - |
| C5F73_RS04400 | 913138..913614 | - | 477 | WP_001186773.1 | RadC family protein | - |
| C5F73_RS04405 | 913630..914115 | - | 486 | WP_048229156.1 | antirestriction protein | - |
| C5F73_RS04410 | 914207..915025 | - | 819 | WP_001556365.1 | DUF945 domain-containing protein | - |
| C5F73_RS04415 | 915124..915435 | - | 312 | WP_001556366.1 | hypothetical protein | - |
| C5F73_RS04420 | 915774..916193 | - | 420 | WP_032141335.1 | hypothetical protein | - |
| C5F73_RS04425 | 916314..916994 | - | 681 | WP_001556368.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 14090.11 Da Isoelectric Point: 8.2905
>T96663 WP_061355093.1 NZ_CP026932:c912316-911942 [Escherichia coli]
MKTLPDTHVREASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMARDNYRTVNNITLGKHPEKR
MKTLPDTHVREASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMARDNYRTVNNITLGKHPEKR
Download Length: 375 bp
>T96663 NZ_CP026932:c912316-911942 [Escherichia coli]
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCATTACGGCCTTACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCCCGCCGGGCAACCGGCCTGATGGCCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGCATCCGGAGAAACGATGA
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCATTACGGCCTTACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCCCGCCGGGCAACCGGCCTGATGGCCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGCATCCGGAGAAACGATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13614.37 Da Isoelectric Point: 6.2035
>AT96663 WP_012139188.1 NZ_CP026932:c912774-912406 [Escherichia coli]
MSDTFSGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCDADTLGSCGYVYLAVYPTPETKK
MSDTFSGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCDADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT96663 NZ_CP026932:c912774-912406 [Escherichia coli]
ATGTCAGACACATTCTCCGGGACAACGCATCCCGATGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGTACCGTGAC
ACCTTGTTTTGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCGGATGCATACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCTAAAGGGCTGACCTGCGATGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACCCCCGAAACGAAAAAGTAA
ATGTCAGACACATTCTCCGGGACAACGCATCCCGATGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGTACCGTGAC
ACCTTGTTTTGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCGGATGCATACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCTAAAGGGCTGACCTGCGATGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACCCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|