Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1487404..1487637 | Replicon | chromosome |
| Accession | NZ_CP026878 | ||
| Organism | Shigella dysenteriae strain 07-3308 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1487404..1487507 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1487404..1487637 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P62_RS08210 | 1483168..1483287 | - | 120 | WP_001131442.1 | hypothetical protein | - |
| C1P62_RS08215 | 1483248..1483433 | - | 186 | WP_023637031.1 | hypothetical protein | - |
| C1P62_RS08230 | 1484471..1484752 | + | 282 | WP_078164586.1 | excisionase | - |
| C1P62_RS08235 | 1484867..1485564 | - | 698 | Protein_1570 | IS1 family transposase | - |
| C1P62_RS08240 | 1485641..1486797 | + | 1157 | WP_134801760.1 | IS3-like element IS600 family transposase | - |
| C1P62_RS08245 | 1486843..1487282 | + | 440 | Protein_1572 | tyrosine-type recombinase/integrase | - |
| - | 1487404..1487507 | - | 104 | - | - | Toxin |
| - | 1487404..1487637 | + | 234 | - | - | Antitoxin |
| C1P62_RS08250 | 1487665..1488006 | - | 342 | WP_000976472.1 | YebY family protein | - |
| C1P62_RS08255 | 1488019..1488891 | - | 873 | WP_000879288.1 | copper homeostasis membrane protein CopD | - |
| C1P62_RS08260 | 1488895..1489269 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| C1P62_RS08265 | 1489408..1489638 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P62_RS08270 | 1489740..1490396 | + | 657 | WP_000896381.1 | carbon-nitrogen hydrolase family protein | - |
| C1P62_RS08275 | 1490420..1491082 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96513 NZ_CP026878:c1487507-1487404 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT96513 NZ_CP026878:1487404-1487637 [Shigella dysenteriae]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
