Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1917903..1918171 | Replicon | chromosome |
| Accession | NZ_CP026853 | ||
| Organism | Escherichia coli strain MS7163 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1917941..1918043 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1917903..1918171 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MS7163_RS10210 | 1915060..1916499 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MS7163_RS10215 | 1916617..1916853 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| MS7163_RS10220 | 1916958..1917149 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MS7163_RS10225 | 1917150..1917806 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 1917903..1918171 | + | 269 | - | - | Antitoxin |
| - | 1917941..1918043 | - | 103 | - | - | Toxin |
| MS7163_RS10230 | 1918201..1918542 | - | 342 | WP_000984819.1 | YebY family protein | - |
| MS7163_RS10235 | 1918555..1919427 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| MS7163_RS10240 | 1919431..1919805 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MS7163_RS10245 | 1919944..1920174 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MS7163_RS10250 | 1920276..1920932 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| MS7163_RS10255 | 1920955..1921617 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T96487 NZ_CP026853:c1918043-1917941 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT96487 NZ_CP026853:1917903-1918171 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
