Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 644843..645044 | Replicon | chromosome |
| Accession | NZ_CP026850 | ||
| Organism | Enterobacter cloacae complex sp. strain AR_0072 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 644848..644951 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 644843..645044 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM451_RS02990 (AM451_02990) | 641103..642551 | + | 1449 | WP_196362492.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM451_RS02995 (AM451_02995) | 642658..642897 | + | 240 | WP_006811010.1 | YebV family protein | - |
| AM451_RS03000 (AM451_03000) | 642932..643576 | - | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| AM451_RS03005 (AM451_03005) | 643744..644724 | + | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| AM451_RS03010 (AM451_03010) | 644770..644967 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 644843..645044 | + | 202 | - | - | Antitoxin |
| - | 644848..644951 | - | 104 | - | - | Toxin |
| AM451_RS03015 (AM451_03015) | 645092..645430 | - | 339 | WP_003859787.1 | YebY family protein | - |
| AM451_RS03020 (AM451_03020) | 645447..646293 | - | 847 | Protein_597 | copper homeostasis membrane protein CopD | - |
| AM451_RS03025 (AM451_03025) | 646295..646666 | - | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| AM451_RS03030 (AM451_03030) | 646804..647034 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AM451_RS03035 (AM451_03035) | 647146..647796 | + | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| AM451_RS03040 (AM451_03040) | 647821..648483 | + | 663 | WP_047051600.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 635733..711498 | 75765 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96453 NZ_CP026850:c644951-644848 [Enterobacter cloacae complex sp.]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT96453 NZ_CP026850:644843-645044 [Enterobacter cloacae complex sp.]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
