Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1354299..1354533 | Replicon | chromosome |
| Accession | NZ_CP026836 | ||
| Organism | Shigella boydii strain ATCC 49812 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1354300..1354403 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1354299..1354533 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P56_RS07130 | 1349858..1350154 | + | 297 | WP_001277359.1 | host-nuclease inhibitor Gam family protein | - |
| C1P56_RS07135 | 1350160..1350972 | + | 813 | WP_241560024.1 | AAA family ATPase | - |
| C1P56_RS07140 | 1351013..1352155 | - | 1143 | WP_134796357.1 | IS3 family transposase | - |
| C1P56_RS07145 | 1352271..1352510 | + | 240 | WP_000932577.1 | hypothetical protein | - |
| C1P56_RS07150 | 1352550..1352738 | + | 189 | WP_000276806.1 | DUF1187 family protein | - |
| - | 1352556..1352734 | - | 179 | NuclAT_1 | - | - |
| - | 1352556..1352734 | - | 179 | NuclAT_1 | - | - |
| - | 1352556..1352734 | - | 179 | NuclAT_1 | - | - |
| - | 1352556..1352734 | - | 179 | NuclAT_1 | - | - |
| C1P56_RS07155 | 1352845..1353126 | + | 282 | WP_077901267.1 | excisionase | - |
| C1P56_RS07160 | 1353092..1354168 | + | 1077 | WP_001189098.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1354299..1354533 | + | 235 | - | - | Antitoxin |
| - | 1354300..1354403 | - | 104 | - | - | Toxin |
| C1P56_RS07165 | 1354561..1354902 | - | 342 | WP_000976480.1 | YebY family protein | - |
| C1P56_RS07170 | 1354915..1355787 | - | 873 | WP_000879307.1 | copper homeostasis membrane protein CopD | - |
| C1P56_RS07175 | 1355791..1356165 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P56_RS07180 | 1356304..1356534 | + | 231 | WP_000916767.1 | DNA polymerase III subunit theta | - |
| C1P56_RS07185 | 1356636..1357291 | + | 656 | Protein_1409 | carbon-nitrogen hydrolase family protein YobB | - |
| C1P56_RS07190 | 1357315..1357977 | + | 663 | WP_000944257.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1351013..1352155 | 1142 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96368 NZ_CP026836:c1354403-1354300 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT96368 NZ_CP026836:1354299-1354533 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
