Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2869861..2870095 | Replicon | chromosome |
| Accession | NZ_CP026828 | ||
| Organism | Shigella dysenteriae strain ATCC 12037 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2869991..2870094 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2869861..2870095 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P70_RS14890 | 2865462..2865692 | - | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| C1P70_RS14895 | 2865831..2866205 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P70_RS14900 | 2866209..2866565 | + | 357 | Protein_2860 | hypothetical protein | - |
| C1P70_RS14905 | 2866623..2867320 | + | 698 | WP_230201452.1 | IS1-like element IS1A family transposase | - |
| C1P70_RS14910 | 2867336..2868190 | + | 855 | Protein_2862 | fimbrial usher FimD | - |
| C1P70_RS14920 | 2868952..2869479 | + | 528 | Protein_2864 | CopD family protein | - |
| C1P70_RS14925 | 2869492..2869833 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2869861..2870095 | - | 235 | - | - | Antitoxin |
| - | 2869991..2870094 | + | 104 | - | - | Toxin |
| C1P70_RS14930 | 2870226..2870753 | - | 528 | Protein_2866 | tyrosine-type recombinase/integrase | - |
| C1P70_RS14935 | 2870819..2871975 | + | 1157 | WP_129592867.1 | IS3-like element IS600 family transposase | - |
| C1P70_RS26760 | 2872018..2872450 | - | 433 | Protein_2868 | integrase | - |
| C1P70_RS14950 | 2873308..2874476 | + | 1169 | WP_094096507.1 | IS3-like element IS911 family transposase | - |
| C1P70_RS14955 | 2874485..2874834 | - | 350 | Protein_2871 | transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | IScluster/Tn | - | fimD / ipaH9.8 | 2866817..2891089 | 24272 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96270 NZ_CP026828:2869991-2870094 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCTCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCTCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT96270 NZ_CP026828:c2870095-2869861 [Shigella dysenteriae]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGAGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGAGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
