Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4346585..4346819 | Replicon | chromosome |
| Accession | NZ_CP026814 | ||
| Organism | Shigella boydii strain 83-578 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4346586..4346689 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4346585..4346819 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P60_RS23730 | 4343489..4344186 | + | 698 | Protein_4335 | IS1 family transposase | - |
| C1P60_RS23735 | 4344469..4344666 | + | 198 | Protein_4336 | metallophosphoesterase | - |
| C1P60_RS23745 | 4345927..4346454 | + | 528 | Protein_4338 | tyrosine-type recombinase/integrase | - |
| - | 4346585..4346819 | + | 235 | - | - | Antitoxin |
| - | 4346586..4346689 | - | 104 | - | - | Toxin |
| C1P60_RS23750 | 4346847..4347188 | - | 342 | WP_000976477.1 | YebY family protein | - |
| C1P60_RS23755 | 4347201..4348073 | - | 873 | WP_000879299.1 | copper homeostasis membrane protein CopD | - |
| C1P60_RS23760 | 4348077..4348451 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P60_RS23765 | 4348590..4348820 | + | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| C1P60_RS23770 | 4348922..4349578 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C1P60_RS23775 | 4349602..4350264 | + | 663 | WP_000944259.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | ipaH9.8 | 4336204..4347188 | 10984 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96163 NZ_CP026814:c4346689-4346586 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT96163 NZ_CP026814:4346585-4346819 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
