Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1180199..1180432 | Replicon | chromosome |
| Accession | NZ_CP026811 | ||
| Organism | Shigella flexneri strain 64-5500 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1180200..1180303 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1180199..1180432 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P83_RS06315 | 1175350..1176006 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C1P83_RS06325 | 1176520..1177341 | - | 822 | Protein_1227 | IS3-like element IS600 family transposase | - |
| C1P83_RS06340 | 1179551..1180078 | + | 528 | Protein_1230 | tyrosine-type recombinase/integrase | - |
| - | 1180199..1180432 | + | 234 | - | - | Antitoxin |
| - | 1180200..1180303 | - | 104 | - | - | Toxin |
| C1P83_RS06345 | 1180460..1180801 | - | 342 | WP_000976476.1 | YebY family protein | - |
| C1P83_RS06350 | 1180814..1181635 | - | 822 | WP_000959864.1 | copper homeostasis membrane protein CopD | - |
| C1P83_RS06355 | 1181690..1182064 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P83_RS06360 | 1182203..1182433 | + | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| C1P83_RS06365 | 1182535..1183191 | + | 657 | WP_000011642.1 | carbon-nitrogen hydrolase family protein YobB | - |
| C1P83_RS06370 | 1183215..1183877 | + | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
| C1P83_RS06375 | 1183874..1185016 | - | 1143 | Protein_1237 | prolyl oligopeptidase family serine peptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96133 NZ_CP026811:c1180303-1180200 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT96133 NZ_CP026811:1180199-1180432 [Shigella flexneri]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
