Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 922836..923070 | Replicon | chromosome |
| Accession | NZ_CP026807 | ||
| Organism | Shigella dysenteriae strain 204/96 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 922966..923069 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 922836..923070 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P75_RS04930 | 918055..918717 | - | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
| C1P75_RS04935 | 918741..919397 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| C1P75_RS04940 | 919499..919729 | - | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| C1P75_RS04945 | 919868..920242 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P75_RS04955 | 921633..922454 | + | 822 | WP_046891729.1 | copper homeostasis membrane protein CopD | - |
| C1P75_RS04960 | 922467..922808 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 922836..923070 | - | 235 | - | - | Antitoxin |
| - | 922966..923069 | + | 104 | - | - | Toxin |
| C1P75_RS04965 | 923201..923728 | - | 528 | Protein_955 | tyrosine-type recombinase/integrase | - |
| C1P75_RS04970 | 923794..924950 | + | 1157 | WP_094096479.1 | IS3-like element IS600 family transposase | - |
| C1P75_RS04975 | 924993..925434 | - | 442 | Protein_957 | integrase | - |
| C1P75_RS04980 | 925506..926674 | + | 1169 | WP_094112582.1 | IS3-like element IS911 family transposase | - |
| C1P75_RS04985 | 926683..927032 | - | 350 | Protein_959 | transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | IScluster/Tn | - | ipaH9.8 | 920299..948740 | 28441 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96106 NZ_CP026807:922966-923069 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCTCTGGACCGAATAC
AGGAATTGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCTCTGGACCGAATAC
AGGAATTGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT96106 NZ_CP026807:c923070-922836 [Shigella dysenteriae]
TAAAAAAAGACCGAATACAATTCCTGTATTCGGTCCAGAGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACAATTCCTGTATTCGGTCCAGAGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
