Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 4176147..4176697 Replicon chromosome
Accession NZ_CP026784
Organism Shigella dysenteriae strain 80-547

Toxin (Protein)


Gene name ccdB Uniprot ID Q32K46
Locus tag C5B79_RS22830 Protein ID WP_001160974.1
Coordinates 4176147..4176461 (-) Length 105 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID D3H431
Locus tag C5B79_RS22835 Protein ID WP_000125565.1
Coordinates 4176464..4176697 (-) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C5B79_RS22805 4171822..4173108 + 1287 WP_000800471.1 peptidylprolyl isomerase SurA -
C5B79_RS22810 4173108..4174097 + 990 WP_000241239.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
C5B79_RS22815 4174094..4174915 + 822 WP_001065369.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
C5B79_RS22820 4174918..4175295 + 378 WP_000610901.1 Co2+/Mg2+ efflux protein ApaG -
C5B79_RS22825 4175302..4176150 + 849 WP_000257202.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH -
C5B79_RS22830 4176147..4176461 - 315 WP_001160974.1 CcdB family protein Toxin
C5B79_RS22835 4176464..4176697 - 234 WP_000125565.1 type II toxin-antitoxin system CcdA family antitoxin Antitoxin
C5B79_RS22840 4176783..4177262 - 480 WP_005020907.1 type 3 dihydrofolate reductase -
C5B79_RS22845 4177454..4179121 - 1668 WP_000377138.1 glutathione-regulated potassium-efflux system protein -
C5B79_RS22850 4179114..4179644 - 531 WP_000600719.1 glutathione-regulated potassium-efflux system oxidoreductase KefF -
C5B79_RS22860 4179755..4181086 - 1332 Protein_4272 MFS transporter -
C5B79_RS22865 4181144..4181431 - 288 WP_000203741.1 ferredoxin-like protein FixX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin CcdB

(2-103)

Antitoxin

Post-segregation antitoxin CcdA

(8-77)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 11737.84 Da        Isoelectric Point: 9.8517

>T95905 WP_001160974.1 NZ_CP026784:c4176461-4176147 [Shigella dysenteriae]
MQFTVYRSRSRNAAFPFVIDVTSDIIGVINRRIVIPLTPIERFIRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALG
TKFCDASAHRTLIKGALDFMLDGI

Download         Length: 315 bp

>T95905 NZ_CP026784:c4176461-4176147 [Shigella dysenteriae]
ATGCAATTTACGGTATACCGCAGTCGCAGCAGGAACGCCGCGTTTCCCTTTGTTATCGATGTTACCAGCGACATTATTGG
TGTGATTAATCGCCGTATTGTTATTCCATTAACACCTATTGAACGATTTATCCGTATTCGCCCACCAGAACGGCTTAACC
CAATCCTTTTACTGGTAGACGGCAAAGAATATGTGCTCATGACGCATGAGACTGCAACTGTCCCAGTTAACGCGCTGGGA
ACGAAATTTTGCGATGCCAGCGCGCACCGAACGTTGATTAAAGGAGCATTAGATTTTATGCTCGACGGGATTTAA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8599.64 Da        Isoelectric Point: 6.9791

>AT95905 WP_000125565.1 NZ_CP026784:c4176697-4176464 [Shigella dysenteriae]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRRF

Download         Length: 234 bp

>AT95905 NZ_CP026784:c4176697-4176464 [Shigella dysenteriae]
ATGACTGCAAAACGTACCACACAAAGTGTGACCGTCACCGTCGACCGTGAGTTAGTCAATCGCGCTCGTGATGCAGGCTT
AAATATGAGCGCCACCCTTACGGTTGCGCTCAATGCTGAACTTAAAAAACATGCAGCAACACGTTGGCGTGAAGAGAACG
CAGAAGCTATCGCTGCGTTAAATCAATTGGCTGATGAAACCGGATGTTTCTCTGATGAGTACCGGCGCTTCTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9LRR3

Antitoxin

Source ID Structure
AlphaFold DB A0A090NGC7

References