Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3144126..3144359 | Replicon | chromosome |
| Accession | NZ_CP026784 | ||
| Organism | Shigella dysenteriae strain 80-547 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3144126..3144229 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3144126..3144359 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5B79_RS17180 | 3139889..3140008 | - | 120 | WP_001131442.1 | hypothetical protein | - |
| C5B79_RS17185 | 3139969..3140154 | - | 186 | WP_023637031.1 | hypothetical protein | - |
| C5B79_RS17190 | 3140346..3141041 | - | 696 | Protein_3203 | IS1-like element IS1N family transposase | - |
| C5B79_RS17200 | 3141193..3141474 | + | 282 | WP_134806426.1 | excisionase | - |
| C5B79_RS17205 | 3141589..3142285 | - | 697 | Protein_3205 | IS1 family transposase | - |
| C5B79_RS17210 | 3142362..3143518 | + | 1157 | WP_134801760.1 | IS3-like element IS600 family transposase | - |
| C5B79_RS17215 | 3143564..3144004 | + | 441 | Protein_3207 | tyrosine-type recombinase/integrase | - |
| - | 3144126..3144229 | - | 104 | - | - | Toxin |
| - | 3144126..3144359 | + | 234 | - | - | Antitoxin |
| C5B79_RS17220 | 3144387..3144728 | - | 342 | WP_134802023.1 | YebY family protein | - |
| C5B79_RS17225 | 3144741..3145613 | - | 873 | WP_000879288.1 | copper homeostasis membrane protein CopD | - |
| C5B79_RS17230 | 3145617..3145991 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| C5B79_RS17235 | 3146130..3146360 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C5B79_RS17240 | 3146462..3147118 | + | 657 | WP_000896381.1 | carbon-nitrogen hydrolase family protein | - |
| C5B79_RS17245 | 3147142..3147804 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95894 NZ_CP026784:c3144229-3144126 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT95894 NZ_CP026784:3144126-3144359 [Shigella dysenteriae]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
