Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3312907..3313140 | Replicon | chromosome |
| Accession | NZ_CP026782 | ||
| Organism | Shigella dysenteriae strain 08-3380 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3313037..3313140 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3312907..3313140 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P64_RS18460 | 3309462..3310124 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C1P64_RS18465 | 3310148..3310804 | - | 657 | WP_000896381.1 | carbon-nitrogen hydrolase family protein | - |
| C1P64_RS18470 | 3310906..3311136 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P64_RS18475 | 3311275..3311649 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| C1P64_RS18480 | 3311653..3312525 | + | 873 | WP_000879288.1 | copper homeostasis membrane protein CopD | - |
| C1P64_RS18485 | 3312538..3312879 | + | 342 | WP_134802023.1 | YebY family protein | - |
| - | 3312907..3313140 | - | 234 | - | - | Antitoxin |
| - | 3313037..3313140 | + | 104 | - | - | Toxin |
| C1P64_RS18490 | 3313262..3313702 | - | 441 | Protein_3358 | tyrosine-type recombinase/integrase | - |
| C1P64_RS18500 | 3314981..3315677 | + | 697 | Protein_3360 | IS1 family transposase | - |
| C1P64_RS18505 | 3315792..3316073 | - | 282 | WP_134806426.1 | excisionase | - |
| C1P64_RS18515 | 3316225..3316920 | + | 696 | Protein_3362 | IS1-like element IS1N family transposase | - |
| C1P64_RS18520 | 3317112..3317297 | + | 186 | WP_023637031.1 | hypothetical protein | - |
| C1P64_RS18525 | 3317258..3317377 | + | 120 | WP_001131442.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95875 NZ_CP026782:3313037-3313140 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT95875 NZ_CP026782:c3313140-3312907 [Shigella dysenteriae]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
