Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 953069..953302 | Replicon | chromosome |
| Accession | NZ_CP026780 | ||
| Organism | Shigella dysenteriae strain 53-3937 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 953199..953302 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 953069..953302 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P63_RS05270 | 949624..950286 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C1P63_RS05275 | 950310..950966 | - | 657 | WP_000896381.1 | carbon-nitrogen hydrolase family protein | - |
| C1P63_RS05280 | 951068..951298 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P63_RS05285 | 951437..951811 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| C1P63_RS05290 | 951815..952687 | + | 873 | WP_000879288.1 | copper homeostasis membrane protein CopD | - |
| C1P63_RS05295 | 952700..953041 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 953069..953302 | - | 234 | - | - | Antitoxin |
| - | 953199..953302 | + | 104 | - | - | Toxin |
| C1P63_RS05300 | 953424..953864 | - | 441 | Protein_985 | tyrosine-type recombinase/integrase | - |
| C1P63_RS05310 | 955143..955840 | + | 698 | Protein_987 | IS1 family transposase | - |
| C1P63_RS05315 | 955955..956236 | - | 282 | WP_078164586.1 | excisionase | - |
| C1P63_RS05325 | 956388..957082 | + | 695 | WP_134802562.1 | IS1-like element IS1N family transposase | - |
| C1P63_RS05330 | 957274..957459 | + | 186 | WP_023637031.1 | hypothetical protein | - |
| C1P63_RS05335 | 957420..957539 | + | 120 | WP_001131442.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95851 NZ_CP026780:953199-953302 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT95851 NZ_CP026780:c953302-953069 [Shigella dysenteriae]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
