Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 760034..760267 | Replicon | chromosome |
| Accession | NZ_CP026774 | ||
| Organism | Shigella dysenteriae strain ATCC 13313 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 760034..760137 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 760034..760267 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P61_RS04335 | 755798..755917 | - | 120 | WP_001131442.1 | hypothetical protein | - |
| C1P61_RS04340 | 755878..756063 | - | 186 | WP_023637031.1 | hypothetical protein | - |
| C1P61_RS04355 | 757101..757382 | + | 282 | WP_078164586.1 | excisionase | - |
| C1P61_RS04360 | 757497..758193 | - | 697 | Protein_818 | IS1 family transposase | - |
| C1P61_RS04365 | 758270..759426 | + | 1157 | WP_134801760.1 | IS3-like element IS600 family transposase | - |
| C1P61_RS04370 | 759472..759912 | + | 441 | Protein_820 | tyrosine-type recombinase/integrase | - |
| - | 760034..760137 | - | 104 | - | - | Toxin |
| - | 760034..760267 | + | 234 | - | - | Antitoxin |
| C1P61_RS04375 | 760295..760636 | - | 342 | WP_000976472.1 | YebY family protein | - |
| C1P61_RS04380 | 760649..761521 | - | 873 | WP_000879288.1 | copper homeostasis membrane protein CopD | - |
| C1P61_RS04385 | 761525..761899 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| C1P61_RS04390 | 762038..762268 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P61_RS04395 | 762370..763026 | + | 657 | WP_134801761.1 | carbon-nitrogen hydrolase family protein | - |
| C1P61_RS04400 | 763050..763712 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95781 NZ_CP026774:c760137-760034 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT95781 NZ_CP026774:760034-760267 [Shigella dysenteriae]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
