Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 536716..536950 | Replicon | chromosome |
| Accession | NZ_CP026768 | ||
| Organism | Shigella flexneri Y strain 93-3063 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 536846..536949 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 536716..536950 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P87_RS02850 | 533271..533933 | - | 663 | WP_000944270.1 | exodeoxyribonuclease X | - |
| C1P87_RS02855 | 533957..534613 | - | 657 | Protein_535 | carbon-nitrogen hydrolase family protein | - |
| C1P87_RS02860 | 534715..534945 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P87_RS02865 | 535084..535458 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P87_RS02870 | 535513..536334 | + | 822 | Protein_538 | copper homeostasis membrane protein CopD | - |
| C1P87_RS02875 | 536347..536688 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 536716..536950 | - | 235 | - | - | Antitoxin |
| - | 536846..536949 | + | 104 | - | - | Toxin |
| C1P87_RS02880 | 537081..538157 | - | 1077 | Protein_540 | phage integrase Arm DNA-binding domain-containing protein | - |
| C1P87_RS02885 | 538123..538404 | - | 282 | WP_005127484.1 | excisionase | - |
| C1P87_RS02890 | 539417..539418 | - | 2 | WP_134796927.1 | IS3-like element IS600 family transposase | - |
| C1P87_RS02895 | 539777..539965 | - | 189 | WP_000276807.1 | DUF1187 family protein | - |
| - | 539781..539959 | + | 179 | NuclAT_0 | - | - |
| - | 539781..539959 | + | 179 | NuclAT_0 | - | - |
| - | 539781..539959 | + | 179 | NuclAT_0 | - | - |
| - | 539781..539959 | + | 179 | NuclAT_0 | - | - |
| C1P87_RS02900 | 540016..541113 | - | 1098 | WP_134798213.1 | AAA family ATPase | - |
| C1P87_RS02905 | 541143..541415 | - | 273 | WP_001277358.1 | host-nuclease inhibitor Gam family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95759 NZ_CP026768:536846-536949 [Shigella flexneri Y]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT95759 NZ_CP026768:c536950-536716 [Shigella flexneri Y]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
