Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4386369..4386603 | Replicon | chromosome |
| Accession | NZ_CP026766 | ||
| Organism | Shigella boydii strain 59-248 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4386499..4386602 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4386369..4386603 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P58_RS22740 | 4381786..4382927 | + | 1142 | Protein_4306 | prolyl oligopeptidase family serine peptidase | - |
| C1P58_RS22745 | 4382924..4383586 | - | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
| C1P58_RS22750 | 4383610..4384266 | - | 657 | WP_000011642.1 | carbon-nitrogen hydrolase family protein | - |
| C1P58_RS22755 | 4384368..4384598 | - | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| C1P58_RS22760 | 4384737..4385111 | + | 375 | WP_134802482.1 | CopC domain-containing protein YobA | - |
| C1P58_RS22765 | 4385115..4385987 | + | 873 | WP_000879302.1 | copper homeostasis membrane protein CopD | - |
| C1P58_RS22770 | 4386000..4386341 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 4386369..4386603 | - | 235 | - | - | Antitoxin |
| - | 4386499..4386602 | + | 104 | - | - | Toxin |
| C1P58_RS22775 | 4386734..4387261 | - | 528 | Protein_4313 | tyrosine-type recombinase/integrase | - |
| C1P58_RS22785 | 4388694..4389796 | + | 1103 | Protein_4315 | IS3 family transposase | - |
| C1P58_RS22790 | 4389839..4390276 | - | 438 | Protein_4316 | phage integrase SAM-like domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 4369454..4521977 | 152523 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95744 NZ_CP026766:4386499-4386602 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT95744 NZ_CP026766:c4386603-4386369 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
