Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1823080..1823351 | Replicon | chromosome |
| Accession | NZ_CP026755 | ||
| Organism | Escherichia coli strain AR_0077 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1823118..1823221 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1823080..1823351 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM456_RS10270 | 1820237..1821676 | + | 1440 | WP_032171865.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM456_RS10275 | 1821794..1822030 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM456_RS10280 | 1822135..1822326 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AM456_RS10285 | 1822327..1822983 | - | 657 | WP_000814509.1 | protein-serine/threonine phosphatase | - |
| - | 1823080..1823351 | + | 272 | - | - | Antitoxin |
| - | 1823118..1823221 | - | 104 | - | - | Toxin |
| AM456_RS10290 | 1823379..1823720 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AM456_RS10295 | 1823733..1824605 | - | 873 | WP_094029620.1 | copper homeostasis membrane protein CopD | - |
| AM456_RS10300 | 1824609..1824983 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM456_RS10305 | 1825122..1825352 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM456_RS10310 | 1825454..1826110 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| AM456_RS10315 | 1826134..1826796 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95658 NZ_CP026755:c1823221-1823118 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT95658 NZ_CP026755:1823080-1823351 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
